Peace has settled in Mitakihara City, beginning a new era where magical girls and "witches" coexist. While they are no longer in constant peril, the magical girls at Mitakihara Middle School now face an equally troubling problem: experiencing a fulfilling youth!

Wanting to create a place where everyone can gather, Mami Tomoe suggests to Madoka Kaname and Sayaka Miki that they start a magical girl club. Joined by the eager Homura Akemi, the preliminary arrangements progress smoothly until the Student Council, led by Kyuubey and its cohorts, announces that their application has been rejected. The committee's demands push the girls to continue their efforts to establish the club—a venture that will lead them into absurd conflicts and rowdy quarrels with their schoolmates and even each other!

[Written by MAL Rewrite]